Basic Information
VIS ID
TVIS10019743
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1554
End
1731
Integrated sequence
CTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGAC
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
104748151/104095801 (Hg38)
End
104748151/104095801 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/2049797; hsa-mir-1267/Downstream/3435370;
Nearest TSS
ENST00000623511/Upstream/670601; ENST00000640578/Downstream/1370066;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1249388, chr13-CpG: 29/Downstream/2397259
Nearby gene
LINC01309
Upstream sequence
TAGGTAAGAATTTGCCTTAACCGTATAGGTTGACACTGACTGCAAATGGAAAGGTGCCATTTATGCAAAAGATTTTTAAAGAAATCAGAAATATTTCCTG
Downstream sequence
AAGCTTTATGCGGACAGAGGAAGAGGAACCTCAGGAAAAAGAATTATTTCAGAGAGAACATCATGGATATTTTTAAATAAACAAGTTTTAGAGCCCCGAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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