Basic Information
VIS ID
TVIS10019744
Fusion event
HBV-UNC79 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1440
End
1814
Integrated sequence
CGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGA
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
93817246/93350900 (Hg38)
End
93817246/93350900 (Hg38)
Location type
Intron1
Target gene
UNC79
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1260a/Upstream/16084610; hsa-mir-1185-1/Downstream/597326;
Nearest TSS
ENST00000550708/Upstream/3709; ENST00000555664/Downstream/79437;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/3135, chr14-CpG: 45/Downstream/79571
Upstream sequence
GAATTGTAAGAAAGGACCTAGAATTCATTCATATtctctctctctctctccctctgtccttctctttccctctTTTTTGCCAGAAttttaaaaaacagct
Downstream sequence
ttacctccagtataactttatctgtactcttgatttttcttgataagtctaaatttttcaatgtaatcaggaatttctcatgctattactaagagtcatg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate