Basic Information
VIS ID
TVIS10019746
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1770
Integrated sequence
GACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTT| |TGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAG
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
18078207/17984350 (Hg38)
End
18078207/17984350 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/1615408; hsa-mir-11401/Downstream/359663;
Nearest TSS
ENST00000527434/Upstream/11808; ENST00000549796/Downstream/167245;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/513345, chr16-CpG: 18/Downstream/352958
Nearby gene
NPIPA8
Upstream sequence
tgccgcaactccatggagggaaatttggcaggatctatcaaaattacaaaagcacacactgtctgagacagcaactccactttcaggactttgtcctcca
Downstream sequence
atccttgtctcagtgtctgcttctgaagaaatccaaatgaaggcagtgttatcatcatcatcatcatccccattttcaaataagcaaagtgtagcacaga
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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