Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019747
Fusion event
HBV-ACSM2A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1675
Integrated sequence
ACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTC| |TCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTAC
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
Start
End
20473034/20461712 (Hg38)
Location type
Intron1
Target gene
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-3184-3p ; hsa-mir-6818-3p ; hsa-mir-6888-3p ; hsa-mir-6873-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-3120-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-6812-3p ; hsa-mir-216b-5p ; hsa-mir-6807-5p ; hsa-mir-8055 ; hsa-mir-6844 ; hsa-mir-3191-5p ; hsa-mir-6758-3p ; hsa-mir-5571-5p ; hsa-mir-4742-3p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-218-2-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-4320 ; hsa-mir-4797-5p ; hsa-mir-526b-5p ; hsa-mir-6847-5p
Nearest miRNA
hsa-mir-1225/Upstream/1967136; hsa-mir-11401/Downstream/1044337;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/112536, chr16-CpG: 65/Downstream/279612
Upstream sequence
ctggcttcgtagcatatccttcgtgcctgccttctccctacgtgtccctgctcctctacccatgttctctgaaccttccaaataaattacttgcccccaa
Downstream sequence
ctcataataaaagtaatgcaagtgataattttgctgaaataacttttatgcacctgtcttgttagtcaaatacaaaaggttgTTTTTTTCTTTCAGaaaa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13