Basic Information
VIS ID
TVIS10019748
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1792
Integrated sequence
CGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCAT| |AAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTG
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
15060135/15060136 (Hg38)
End
15060135/15060136 (Hg38)
Nearest miRNA
hsa-mir-3156-2/Upstream/229894; hsa-mir-1-2/Downstream/6623382;
Nearest TSS
ENST00000575820/Upstream/81397; ENST00000583946/Downstream/6462;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/59593, chr18-CpG: 29/Downstream/104974
Nearby gene
LINC01444
Upstream sequence
CTTTGTATTAAATCATCatttataatattaaatcatcatttataatattaaatatatatataaaGGAGATTAGAGTGTTGGGACTTTGCAAAAACAATCG
Downstream sequence
TGCTGACCCACTTGACGGAGATACTGGGTACTCCACACCTAACTTATGTCTTGGCCCCTTGTTTCCTACTGTCTTGTTTCTTCTCTCCTACTTACTGATT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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