Basic Information
VIS ID
TVIS10019749
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1784
Integrated sequence
TCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCT| |GTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGC
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22180164/24600200 (Hg38)
End
22180164/24600200 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/278454; hsa-mir-122/Downstream/1991267;
Nearest TSS
ENST00000575820/Upstream/82194; ENST00000583558/Downstream/27982;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/173157, chr18-CpG: 113/Downstream/749015
Nearby gene
LINC01915
Upstream sequence
AAAATGTTTAGGATAGTGTTGTTTCATTTTTAAATACAGATTCCAGAAGGATTTTAAAGAGGAAGCTGAAGTCAACATTTTCTACAGTGACCTGCACAGT
Downstream sequence
TGAATGACTACCAAATGAGTTTTGTCTACCAAGGGTCTACCAGAGAGACCACATGATGTCGCTGTTGCTTAAATATATACGAAAACTCTTTTGTGAGGAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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