Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019750
Fusion event
HBV-DOK6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1820
Integrated sequence
TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
Start
End
67512937/69845701 (Hg38)
Location type
Exon8
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-6818-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-8485 ; hsa-mir-4732-5p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-599 ; hsa-mir-578 ; hsa-mir-3679-3p ; hsa-mir-653-5p ; hsa-mir-3161 ; hsa-mir-2355-5p ; hsa-mir-6793-3p ; hsa-mir-642a-5p ; hsa-mir-141-5p ; hsa-mir-5011-5p ; hsa-mir-410-3p
Nearest miRNA
hsa-mir-1-2/Upstream/2764015; hsa-mir-548av/Downstream/3007620;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/375689, chr18-CpG: 80/Downstream/359584
Upstream sequence
CCACTGGATTTTTTTTGAATGAATTTATTCCAATGGGAAGGTGGCACTCAAGTTTTCAGTATCTCCCTGGGGAATTCATCTGGGCGAGCAGACTACTAAA
Downstream sequence
TGTCATGGGCTTGGCTTTCTTCCCTGTCGCCTCATACTGAGTATGCAATTTACAGAGGACATCTGTTGCTTTATGTCTTAAGGCCACTAGAGGAAGTCAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13