Basic Information
VIS ID
TVIS10019752
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1628
End
1820
Integrated sequence
CCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
47727113/49110576 (Hg38)
End
47727113/49110576 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/1943518; hsa-mir-1-1/Downstream/753283;
Nearest TSS
ENST00000382410/Upstream/19813; ENST00000462328/Downstream/43492;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/63664, chr20-CpG: 83/Downstream/77240
Nearby gene
STAU1
Upstream sequence
TCATGGGCACTAAAGTGACAATGTATACTCTTTATTACTTCCATTCTAGGTCCAACACGATTTTGCATATAATAAAGACAAAAACCAGAAAAATTTAGAA
Downstream sequence
ACCACAATTTTTTACAATTTTAAgatggaaacatgccaaaaggacacaagagtcaccttgacaggtcttctgatgtccaaatttgaagtaatttgaacat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate