Basic Information
VIS ID
TVIS10019754
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1792
Integrated sequence
CGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCAT| |AAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTG
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
14684005/13311684 (Hg38)
End
14684005/13311684 (Hg38)
Nearest miRNA
hsa-mir-10396a/Upstream/4324019; hsa-let-7c/Downstream/94700;
Nearest TSS
ENST00000624081/Upstream/6532; ENST00000427446/Downstream/234349;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2683960, chr21-CpG: 39/Downstream/297931
Nearby gene
MIR3156-3
Upstream sequence
AATCAGTAAGTGGGAGAGAAGAAACAAGACAGTAGGAAACAAGGGGCCAAGACGTAAGTTAGGTGTGGAGTACCCAGTAGCTCTGTCAAAGTGGGTCAGT
Downstream sequence
AACTGTGCAGGTCACTGTAGAAAATGTTGACTTCAACTTCCTCTTTAAAATCCTTCTGGAATCTGTATTTAAAAATGAAACAACACTATCCTAAACATTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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