Basic Information
VIS ID
TVIS10019755
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1540
End
1843
Integrated sequence
CGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAA
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
26848120/25475808 (Hg38)
End
26848120/25475808 (Hg38)
Nearest miRNA
hsa-let-7c/Upstream/2396416; hsa-mir-155/Downstream/98172;
Nearest TSS
ENST00000624081/Upstream/44107; ENST00000456917/Downstream/42530;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/113637, chr21-CpG: 51/Downstream/86303
Nearby gene
MIR155HG
Nearest cancer related gene
MIR155HG(OG, No orient)
Upstream sequence
ATACATTAAAAGCTGACTTAATTAACTAATCTGCTCAGACATTCTTAGAAAATGTTCCTCTTCCTCAGCAGTGTTAGTTTTGCTCTTTTCAGGTCATTCA
Downstream sequence
GACACATAATGGAAGCTGGGTTCAAATATACATGTGAGGTTTCAAATACTACAtgatacaatttagatcagtgtccccacccaaatctcatgttgaaatg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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