Basic Information
VIS ID
TVIS10019756
Fusion event
HBV-LINC00314 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
324
End
1791
Integrated sequence
ACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAA
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
29392212/28019893 (Hg38)
End
29392212/28019893 (Hg38)
Location type
Intron1
Target gene
LINC00314
Nearest miRNA
hsa-let-7c/Upstream/1065850; hsa-mir-3197/Downstream/2355401;
Nearest TSS
ENST00000624081/Upstream/6530; ENST00000412526/Downstream/150250;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/875906, chr21-CpG: 29/Downstream/865210
Upstream sequence
AATCAGTAACTAGGAGAGAAGAAACAAGACAGTAGGAAACAAGGGGCCAAGACGTAAGTTAGGTGTGGAGTACCCAGTAGCTCTGTCAAAGTGGGTCAGT
Downstream sequence
AACTGTGCAGGTCACTGTAGAAAATGTTGACTTCAACTTCCTCTTTAAAATCCTTCTGGAATCTGTATTTAAAAATGAAACAACACTATCCTAAACATTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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