Basic Information
VIS ID
TVIS10019757
Fusion event
HBV-LINC01297 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1539
End
1821
Integrated sequence
ACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAA
Host Sequence
Chromosome
chr22
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
16223970/15753991 (Hg38)
End
16223970/15753991 (Hg38)
Location type
Intron2
Target gene
LINC01297
Nearest miRNA
hsa-let-7a-3/Downstream/2010189;
Nearest TSS
ENST00000624155/Upstream/7361; ENST00000438574/Downstream/11696;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/4234, chr22-CpG: 32/Downstream/6295
Upstream sequence
CACATTTCTCATCTTACGGTTCTTTTGTGTCTACATTTCTCCAGGTCAATATAACTATCACCATAATTTCTTGGTTTCTCTTTAGTTCATCAGTAATTAT
Downstream sequence
GAGTAATGTATTGAAATGTTAATGATATGTTCATGCATTCAGAATCCTCTGCTCTCCGATCTACATAATAGTGAATTATGCTGTCAACGATTACACAGTA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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