Basic Information
VIS ID
TVIS10019761
Fusion event
HBV-STEAP2-AS1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
89763517/90134203 (Hg38)
End
89763517/90134203 (Hg38)
Location type
Intron1
Target gene
STEAP2-AS1
Nearest miRNA
hsa-mir-10525/Upstream/14218934; hsa-mir-10399/Downstream/2069812;
Nearest TSS
ENST00000635602/Upstream/11313; ENST00000475789/Downstream/20172;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14481, chr7-CpG: 49/Downstream/20050
Upstream sequence
TTAAATACGAGTTATGTGCTCAACTGTGAATttatatgaaaaggagattaggacacaacaggcatagaggaaagatcatgtgaagacacagggagaaaac
Downstream sequence
tttctccctgtgtcttcacatgatgtttcctctatgcctgttgtatcctaacctccttttcatataaATTCACAATTGAGCACATAACTCCTATTTAATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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