Basic Information
VIS ID
TVIS10019766
Fusion event
HBV-LOC105377632 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
259
End
463
Integrated sequence
GGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTAT
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
57562618/57335483 (Hg38)
End
57562618/57335483 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105377632
Nearest miRNA
hsa-mir-1301/Upstream/1334688; hsa-mir-10b/Downstream/3051879;
Nearest TSS
ENST00000437798/Upstream/1149713; ENST00000463222/Downstream/572168;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1150079, chr2-CpG: 81/Downstream/711024
Nearby gene
VRK2
Upstream sequence
ggaggttgcggtgagctgagatcgcgccattgcactccagcctgggcaacaagagagaaactccatctcaaaaaaaaaaaaaaaagaaaagaaaagattt
Downstream sequence
aaggtctgcagcttcactcctgaagccagcgagaccatgaacccacccaccgggaggaacgaataactccagatgcaccgccttaagagctataacactc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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