Basic Information
VIS ID
TVIS10019768
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
281
End
433
Integrated sequence
AGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTT
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
85761924/86466107 (Hg38)
End
85761924/86466107 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/3625883; hsa-mir-103a-1/Downstream/648772;
Nearest TSS
ENST00000502646/Upstream/84681; ENST00000509578/Downstream/151797;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2081322, chr5-CpG: 34/Downstream/801433
Nearby gene
COX7C
Upstream sequence
gaagcaacacaggtcatgaagtttgcccaaggtcatattgttgccaaggggtagaattgtccctggatgtcagctgtctggctccagCCCCTATGGTAGC
Downstream sequence
tcgcagtgagtgttacagctcacaaaagcagcgtggacccaaagagtgagcagtagcaagatttattgcaaagagcgaaagaacaaagcttccacagtgt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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