EYS _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019769
Fusion event
HBV-EYS integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
241
End
446
Integrated sequence
CGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTT
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
65257009/64547116 (Hg38)
End
65257009/64547116 (Hg38)
Location type
Intron17
Target gene
EYS
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-510-3p ; hsa-mir-376a-5p ; hsa-mir-4680-5p ; hsa-mir-494-3p
Nearest miRNA
hsa-mir-10398/Upstream/7156904; hsa-mir-10524/Downstream/6829844;
Nearest TSS
ENST00000381078/Upstream/169321; ENST00000449928/Downstream/166219;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/910556, chr6-CpG: 22/Downstream/754244
Upstream sequence
tgctcaggtaagtttactgggagtcttggacccaagacccagtggaaagtttcccacagtggcagataaacagctgcctgaacatttttctttagtgtct
Downstream sequence
ttgcggtgagtgttacagctcataaaggcagtgtggacccaaagagtgagcagcagcaagatttattgcaaagagtgaaagaacaaagcttccacagtgt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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