Basic Information
VIS ID
TVIS10019770
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
226
End
442
Integrated sequence
GAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGT
Host Sequence
Chromosome
chr7
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
86918992/87289676 (Hg38)
End
86918992/87289676 (Hg38)
Nearest miRNA
hsa-mir-10525/Upstream/11374407; hsa-mir-10399/Downstream/4914339;
Nearest TSS
ENST00000635602/Upstream/69089; ENST00000412227/Downstream/55787;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/68968, chr7-CpG: 36/Downstream/55748
Nearby gene
TP53TG1
Upstream sequence
TAAAGGAGAGGGTGGTCTCTTTTCAGGTAAGGATTGCTCATCTTTTTCTTCTGCATGCCTCATGCCATGCATGCCCCATGCAGGTGTAAGCTAGATGGCA
Downstream sequence
aaggtctgcagcttcactcctaaagccagcgagaccacaaacccaccagaaggaagaaagtctgaacacatccgaacatcagaaggaacaaactccagac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate