Basic Information
VIS ID
TVIS10019772
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
476
Integrated sequence
GGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTG| |TCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACC
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
135524698/133787373 (Hg38)
End
135524698/133787373 (Hg38)
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/415710;
Nearest TSS
ENST00000439456/Upstream/160578;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/26126, None/Downstream
Nearby gene
FRG2B
Upstream sequence
CTGTTCAAATTTAATGTTATACTTTATTCAGCTTATTTTAATCTTTATATTAACATATCTGTTTTGAATTATCTGATGCTTTTCTCTCTTGATCATCTAA
Downstream sequence
CTTTGTATGCATGTATACACATAAAGCTTTTGTAAGAAAATTAAGCATTTAATTGTACATGATAAATCCATTAATACTCTATCACTAACTTCTTGGATGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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