Basic Information
VIS ID
TVIS10019773
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
454
Integrated sequence
CCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACT| |ATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTAT
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
45523471/45664226 (Hg38)
End
45523471/45664226 (Hg38)
Nearest miRNA
hsa-mir-1587/Upstream/5826613; hsa-let-7f-2/Downstream/81931;
Nearest TSS
ENST00000429181/Upstream/153742; ENST00000464900/Downstream/101073;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/282045, chrX-CpG: 104/Downstream/186613
Nearby gene
LOC392452
Upstream sequence
tggaagaaagggtatcagtgattgaagatcaaatgaatgaaatCGgggtcagggtcaagggtcagggtcagggtcagggtcaagggtcagggtcaggggt
Downstream sequence
ttgcggtgagtgttacagctcataaaggcagtgtggacccaaagagtgagcagcagcaagatttattgcaaagaacaaagcttccacagtgtggaaggag
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate