Basic Information
VIS ID
TVIS10019774
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1678
End
1869
Integrated sequence
GCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAG
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
249240372/248946173 (Hg38)
End
249240372/248946173 (Hg38)
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/119730;
Nearest TSS
ENST00000473358/Upstream/39801;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39382, None/Downstream
Nearby gene
PGBD2
Upstream sequence
GTTAATTGCTGTCACTCCTGACTTCAGCGAAAGAGGTCGATCGTGGGGTGAGATATTGAAGCTGGGGATTGACCTGTGGACCAAGAGTTTGATGGGGCAA
Downstream sequence
GGAGTCCGCAGACACTTCAAACCCAGTGCATTCCCATTTATCATCTCCTCCGCAGACCTGCTCCCCGACTGCGGCCCTGTCTTGGCAGCCAGCAACAGGC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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