VISDB Viral Integration Site DataBase

VIS ID

TVIS10019776

Fusion event

HBV-GALNTL6 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1883

End

2194

Integrated sequence

CCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCC

Chromosome

chr4

Cytoband

q34.1

Reference genome

Start

End

173136728/172215577 (Hg38)

Location type

Intron2

Target gene

miRNAs that regulate target gene

hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p

Nearest miRNA

hsa-mir-12113/Upstream/1029285; hsa-mir-1305/Downstream/1052583;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/401610, chr4-CpG: 154/Downstream/953215

Upstream sequence

CTGAAACTTCACAGAATAGGGTTGAAGATTGAATTCATAACTATCCCAAAGACCTATCCATTGCACTATGCTTTATTTAAAAACCACAAAACCTGTGCTG

Downstream sequence

tcttttttacttctatcctatcctagtctttatatttaaagtagacttgtaaataaagtttagttgagaattatgtttttatatccactctaaaaatctc