DCHS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019780
Fusion event
HBV-DCHS2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1824
Integrated sequence
TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37.55
Start
155324289/154403137 (Hg38)
End
155324289/154403137 (Hg38)
Location type
Intron7
Target gene
DCHS2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12113/Upstream/1866621; hsa-mir-1305/Downstream/4725665;
Nearest TSS
ENST00000502981/Upstream/11841; ENST00000498375/Downstream/88197;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/69686, chr4-CpG: 24/Downstream/13607
Upstream sequence
TGTATTTTCTGTTTAAAACTACTTCATTATGACATGTTACTTTTGCTTAAATAATATGATTAGTGTGCCAAAAACAGCATTAAAACAACATGTAAATCTT
Downstream sequence
tattttgccttttatttcttttccttgccttactattctgacaaggaccttcatattacaatactgattagaagtggtgagaaaagcacatttttctttt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate