Basic Information
VIS ID
TVIS10019782
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1791
Integrated sequence
CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37.55
Start
44914165/44914063 (Hg38)
End
44914165/44914063 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/6356502; hsa-mir-103a-1/Downstream/9037441;
Nearest TSS
ENST00000502646/Upstream/87987; ENST00000506656/Downstream/121136;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/104473, chr5-CpG: 100/Downstream/781229
Nearby gene
MRPS30
Upstream sequence
atggcttgaatccaggaggtggaggttgcagtgagccaagattgtgccactgcactccagcctggctacagagggagactccatctcaaaaaaaaaaaaa
Downstream sequence
gagagctaactgtcatgagaacggcatggggaaaactgccccccatgatccaatcacctcttaccaatttcctcccctgtcatgtggggattacaatttg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate