Basic Information
VIS ID
TVIS10019783
Fusion event
HBV-LINC01331 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1802
Integrated sequence
GCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCT| |GCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGC
Host Sequence
Chromosome
chr5
Cytoband
q13.3
Reference genome
GRCh37.55
Start
73671630/74375805 (Hg38)
End
73671630/74375805 (Hg38)
Location type
Intron1
Target gene
LINC01331
Nearest miRNA
hsa-mir-10397/Upstream/1497142; hsa-mir-103a-1/Downstream/8464350;
Nearest TSS
ENST00000502646/Upstream/41039; ENST00000515528/Downstream/161171;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/465910, chr5-CpG: 160/Downstream/264095
Upstream sequence
AATCCCCGCAAACAGCTTGTTCTCCATGTCGCCGTAGCACAGGCTGCAGAGCAGCGTGGAGAGGATGGAGCCCTGCGGGATCCCCTGGCACTGGACGTAG
Downstream sequence
GGTTTAAAGCATAATGCAGAGAGTTTTATGAACATTTGAAGGAGCATCTATATGTTATTTGCTTGCCTTCAATATTGGTAGATAGTAAATGCTAAGTAAC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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