Basic Information
VIS ID
TVIS10019790
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1796
Integrated sequence
CTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAAT| |TGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTT
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37.55
Start
48800247/50183710 (Hg38)
End
48800247/50183710 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/319757; hsa-mir-1-1/Downstream/402076;
Nearest TSS
ENST00000382410/Upstream/11120; ENST00000303004/Downstream/7024;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/29538, chr20-CpG: 263/Downstream/6351
Nearby gene
CEBPB-AS1
Upstream sequence
GGATGGGATTTGCTCTTGGCAGTTTGGAAATGAGGAGAGGCCTAGAGGAGGGGAAACCAAGTCACAGTCCTCATGGGAAAGGTGGTTTGGGGCTGGAGTG
Downstream sequence
accactgcgcctggccCACGTTGGCCTtttttttcaaattgtaaaatacgcagaacataaaacttaccatattaaccattttaagtgcacagtttggtgc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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