Basic Information
VIS ID
TVIS10019791
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1791
Integrated sequence
CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37.55
Start
54923636/56348580 (Hg38)
End
54923636/56348580 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/2280095; hsa-mir-1-1/Downstream/972922;
Nearest TSS
ENST00000382410/Upstream/49420; ENST00000437418/Downstream/10335;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/4279, chr20-CpG: 62/Downstream/10191
Nearby gene
FAM210B
Upstream sequence
tcacactgctgcactccagcctggatgacagattgggatgctgttttaaaaaaaaaaaaaaaaaaGTGGTTAATAGGATGGTAAATTTTCTATGTGTCTT
Downstream sequence
gtggaatggcttcctggcttggcaggggattttgtctttcattatatttcctcaacatctcttccttagtacagcataagatccataggctttttgtcct
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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