Basic Information
VIS ID
TVIS10019793
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37.55
Start
37077722/37059649 (Hg38)
End
37077722/37059649 (Hg38)
Nearest miRNA
hsa-mir-23c/Upstream/4418090; hsa-let-7f-2/Downstream/964246;
Nearest TSS
ENST00000429181/Upstream/51252; ENST00000463135/Downstream/289626;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/15716, chrX-CpG: 50/Downstream/289335
Nearby gene
FTH1P18
Upstream sequence
ttagggttaagggttagggttaggggttaggggttagggttggggttggggttagggttagggtagggttagggttagggttaggggttaggggttaggg
Downstream sequence
ccttcatgcatgcaaaatccatgctttccaaactcccaaaacaacccttatttctttgaggacaaaaactgcctttgtagaactaacaaattagccacaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate