Basic Information
VIS ID
TVIS10019794
Fusion event
HBV-chrY integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1826
Integrated sequence
AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAA
Host Sequence
Chromosome
chrY
Cytoband
q11.222
Reference genome
GRCh37.55
Start
20978082/18816196 (Hg38)
End
20978082/18816196 (Hg38)
Nearest miRNA
hsa-mir-12120/Upstream/5336930;
Nearest TSS
ENST00000430575/Upstream/42461; ENST00000465253/Downstream/12466;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/428522, chrY-CpG: 61/Downstream/176521
Nearby gene
HSFY2
Upstream sequence
gctattttaaatagtgctgcaaatgaacataacatgtgtatggacctttataatagaatgatttctattcctttgggtatatactcagtaacgggattgt
Downstream sequence
aaaaaaaaacttcagaaaacaatctcatttacaatagctatgggggataaaaaggagtaaatttaagcaaggaggtaaaaaaatctgcattctgaaaact
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate