Basic Information
VIS ID
TVIS10019798
Fusion event
HBV-TAT-AS1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr16
Cytoband
q22.2
Reference genome
GRCh37.55
Start
71600596/71566693 (Hg38)
End
71600596/71566693 (Hg38)
Location type
Intron2
Target gene
TAT-AS1
Nearest miRNA
hsa-mir-1225/Upstream/1536271; hsa-mir-11401/Downstream/5302243;
Nearest TSS
ENST00000527434/Upstream/904; ENST00000567566/Downstream/3241;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/104336, chr16-CpG: 105/Downstream/59233
Upstream sequence
CGAGTACACGGAGAAGAACTGGAAACATGCAAAAACTCCAAACACGGTCCCCCCCGCCAGAAGCCCTAGGCCTCGGAAGCCGATGCCCACTGCAACCATC
Downstream sequence
AAATGTTTTAGGAACTGTGGTTCTTAAGTAACTCCAAAAGTCAGTACATTTACAAAGAAGTAAATGAAACCTCATAGGTAATGAAACAATGAGACTGAGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate