TANC2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019799
Fusion event
HBV-TANC2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1798
Integrated sequence
TGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTG| |GTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTG
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
GRCh37.55
Start
61406743/63329382 (Hg38)
End
61406743/63329382 (Hg38)
Location type
Intron9
Target gene
TANC2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-99b-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-10226/Upstream/385070; hsa-mir-1250/Downstream/1171392;
Nearest TSS
ENST00000595228/Upstream/15861; ENST00000583545/Downstream/9671;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/362335, chr17-CpG: 19/Downstream/104910
Upstream sequence
ATCATTTATGGTTTAGGATGTTTGGGTTGTATGTTCTGGGAGTAGAGAGCTGGAAAGAAGGGGCAAGTTGTTAATTTTTCATACTGATGGGGTAGCACAT
Downstream sequence
aaactcataactaaagaaatgcaaactaaatcaatactgagataccagttttttacctatcaactagcaaaaattttaaaacatgacaatttaaaaacta
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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