ALB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019805
Fusion event
HBV-ALB integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2804
Integrated sequence
TATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACACTATTTACACACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCG| |CCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGT
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37.55
Start
74271122/73405405 (Hg38)
End
74271122/73405405 (Hg38)
Location type
Intron2
Target gene
ALB
miRNAs that regulate target gene
hsa-mir-492
Nearest miRNA
hsa-mir-12113/Upstream/7128477; hsa-mir-1243/Downstream/3168163;
Nearest TSS
ENST00000502981/Upstream/1097; ENST00000507673/Downstream/3233;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/145992, chr4-CpG: 20/Downstream/214922
Upstream sequence
ACTCTGACAATTACAAATTACTCTTGTTTGTAGAAATGACCTTATTTTATATGACCAACATTACAATGTAGCAAGATGACCATTATGAATATTATTCAAT
Downstream sequence
taaattgtatttaattgtagttaatttgaatgtatatagtcacatgtggctaatggctactgtattggacagtacagCTCTGGAACTTGCTTGGTGGAAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate