hsa-mir-6844 _LIHC.png
WDR70 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019810
Fusion event
HBV-WDR70 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1612
Integrated sequence
GACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATG| |GAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCA
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37.55
Start
37639208/37639106 (Hg38)
End
37639208/37639106 (Hg38)
Location type
Intron10
Fragile sites / regions
FRA5A
Target gene
WDR70
miRNAs that regulate target gene
hsa-mir-6844 ; hsa-mir-6873-3p ; hsa-mir-9-5p ; hsa-mir-4778-3p ; hsa-mir-7152-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-660-3p ; hsa-mir-5193
Nearest miRNA
hsa-mir-10397/Upstream/1491118; hsa-mir-103a-1/Downstream/918396;
Nearest TSS
ENST00000502646/Upstream/159636; ENST00000508730/Downstream/83537;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/259552, chr5-CpG: 51/Downstream/195463
Upstream sequence
TGCCCAGACCTGCTCGATGACGACGGCATCCCTCAGCGGGCTGGTCTCCTGCAGGTGAGCCACGAACTGTCGCATGTACGGCTGGAGGTCTGTCAAGGTA
Downstream sequence
TGAACAGTAGCATCATTGTGTCAGAGCTTTGAAATTCTTTCCCTAGTTGCTTATTTGAGTATTATTCCTTTAAGAATTATAACAATATGATGGAAAAACC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate