RHBG _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019818
Fusion event
HBV-RHBG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1769
Integrated sequence
GGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCT| |TTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAA
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37.55
Start
156340864/156371073 (Hg38)
End
156340864/156371073 (Hg38)
Location type
Intron1
Target gene
RHBG
Nearest miRNA
hsa-mir-101-1/Upstream/419737; hsa-mir-1182/Downstream/49268;
Nearest TSS
ENST00000473358/Upstream/1822; ENST00000622297/Downstream/11070;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1613, chr1-CpG: 49/Downstream/17185
Upstream sequence
ccggtgggctggcactgctgggggacccagtacaccctccgcagctactggcccgggtgctaagttccccattgcctggggccagcagggctggctggct
Downstream sequence
gctctgagcgcggggcccaccaagcccacgcccacccggaactccagctggcccgcaagcgccgcacgcagcccggttcccgctcgtgcctctccctcca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate