NPY2R _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019824
Fusion event
HBV-NPY2R integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1824
Integrated sequence
TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37.55
Start
156097399/155176247 (Hg38)
End
156097399/155176247 (Hg38)
Location type
Intronic
Target gene
NPY2R
miRNAs that regulate target gene
hsa-mir-302f ; hsa-mir-4803
Nearest miRNA
hsa-mir-12113/Upstream/2639731; hsa-mir-1305/Downstream/3952555;
Nearest TSS
ENST00000502981/Upstream/2531; ENST00000329476/Downstream/32184;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/394071, chr4-CpG: 73/Downstream/31769
Nearby gene
NPY2R
Upstream sequence
cactccagtttgtgtgacagaacaagactgtctcaaaataaataaataaataaataaatgaaAGCAAACCTTGATAGCAGTggcgcctggtggctcatgc
Downstream sequence
gccttgtctcagcgactggaagtctttgcagtgagcagcaggacctagtgaagctctggcatttcacgaacaCCAGCAGCCCTGCctctttccctccatc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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