Basic Information
VIS ID
TVIS10019826
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37.55
Start
150075120/150378031 (Hg38)
End
150075120/150378031 (Hg38)
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/2999910; hsa-mir-153-2/Downstream/860390;
Nearest TSS
ENST00000635602/Upstream/5441; ENST00000490973/Downstream/1304;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/5069, chr7-CpG: 90/Downstream/819
Nearby gene
ZNF775
Upstream sequence
TAGCTTCTGGTCTGTATGCTAGTTAACCTAGTAATTAATCCAAATTTCCACCAGAATTTGATTAATACATCTAATCAGCTTCACAGGAAGAAAATTGCAC
Downstream sequence
agaaaattattaaccctattttatagacgaataagtcaaagtccagaaacagaaaagtatcttttataaaaagtacacatgaagttagtgacaaaatcga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate