Basic Information
VIS ID
TVIS10019831
Fusion event
HBV-LINC00907 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1822
Integrated sequence
GTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAAC| |TTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAA
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37.55
Start
39780060/42200095 (Hg38)
End
39780060/42200095 (Hg38)
Location type
Intron1
Target gene
LINC00907
Nearest miRNA
hsa-mir-1-2/Upstream/2523316; hsa-mir-122/Downstream/2769987;
Nearest TSS
ENST00000575820/Upstream/13392; ENST00000586447/Downstream/25869;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2358230, chr18-CpG: 180/Downstream/2478923
Upstream sequence
GTCATGAACGCAACAATTTAGGTTAAATGATAAAGAATACAATGAAATGTCCAGAGTAACACTTGGTCTCTACCTTTCTAACATTCTAACCCAAGGCCAG
Downstream sequence
TTTACTCTAGTAAAGGCAATAAAGATACCTAAAAAACTATTCAGAAAGAAGGTGCAAGATAAAAGAGCCAAATAATCCAGATTAAAAGCAATAACAACAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate