Basic Information
VIS ID
TVIS10019832
Fusion event
HBV-LINC01781 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1784
Integrated sequence
TCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCT| |GTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGC
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37.55
Start
81094982/80629297 (Hg38)
End
81094982/80629297 (Hg38)
Location type
Intron2
Fragile sites / regions
FRA1L
Target gene
LINC01781
Nearest miRNA
hsa-mir-101-1/Upstream/3569095; hsa-mir-11399/Downstream/4504497;
Nearest TSS
ENST00000473358/Upstream/44934; ENST00000443565/Downstream/11987;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/298096, chr1-CpG: 281/Downstream/1171016
Upstream sequence
ccgcctcagcctcccaagtagctgggactacaggcgtgtgccaccgtgctcagctaatttttttaatttttaggagagatgcagtcttgctatgttgctc
Downstream sequence
aggctggtcttgaactcctgatctcaagtgatcctcccacctcagcctcccaaagtgctgggattacaggtgtgaaccaccatgtctggccATCAGCCGT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate