Fusion event
HBV-KCNT2 integration
Detection method
VirusFinder
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Integrated sequence
GCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTA| |AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT
End
196531183/196562053 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/3425470; hsa-mir-1182/Downstream/20360;
Upstream sequence
taagagtggaatcacatgatatttttccttttatgtctgtcaaattttatttagcatgctgttatcactatcattcctgctgtagtgtgtatcagaactt
Downstream sequence
cattctttttacgactgaataatattccattgtctgtataccacattttgtgaacccattcatctgttgatggacacttgggctcttcaacctggtaact
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.