Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019838
Fusion event
HBV-CCDC69 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1773
Integrated sequence
TCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGT| |ACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCT
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
End
150576607/151197046 (Hg38)
Location type
Intron5
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-8070 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-4713-5p ; hsa-mir-4662a-5p ; hsa-mir-3152-3p ; hsa-mir-1193 ; hsa-mir-2116-3p ; hsa-mir-2392 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-892a ; hsa-mir-1228-3p ; hsa-mir-1281 ; hsa-mir-1304-3p ; hsa-mir-1343-3p ; hsa-mir-2276-3p ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-24-3p ; hsa-mir-377-3p ; hsa-mir-4284 ; hsa-mir-4485-5p ; hsa-mir-660-3p ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6852-5p ; hsa-mir-6890-3p ; hsa-mir-8057 ; hsa-mir-939-3p
Nearest miRNA
hsa-mir-10397/Upstream/1464156; hsa-mir-103a-1/Downstream/325041;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/39189, chr5-CpG: 44/Downstream/26606
Upstream sequence
ctgttaatatgtatatagtaccctctatgtattaggcactgttctccaaggacttaatatctattcgtttaatcttcacaactaccttcattgcaaggta
Downstream sequence
agatgcatgctgcaacacagatgagccctggaaacatttcaaggtgaaaacattccaaggtgaaagaagtcagatgtgggtgatcatgtgggttatacaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.