Basic Information
VIS ID
TVIS10019839
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37.55
Start
16972020/16971789 (Hg38)
End
16972020/16971789 (Hg38)
Nearest miRNA
hsa-mir-3691/Upstream/830165; hsa-mir-10398/Downstream/1599995;
Nearest TSS
ENST00000381078/Upstream/207443; ENST00000354384/Downstream/130469;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/209035, chr6-CpG: 34/Downstream/130289
Nearby gene
STMND1
Upstream sequence
CTCTGTGCCTGCCCCCCAACCCAGATGGTTCCATGTGTAAAAGAGATAAAGAGTGGGGACAGAGAAGGGCCCCCACTGTGCCTTTACAGCAGGAAATACA
Downstream sequence
gcatacaaaaagatacatatttaacacattggactggttgtatggggagactggaataggaaatatggataaaagggattttaaaaagtaaagagggacc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate