Basic Information
VIS ID
TVIS10019841
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr8
Cytoband
q23.2
Reference genome
GRCh37.55
Start
111067397/110055168 (Hg38)
End
111067397/110055168 (Hg38)
Nearest miRNA
hsa-mir-12123/Upstream/5570703; hsa-mir-10400/Downstream/2588325;
Nearest TSS
ENST00000518652/Upstream/79321; ENST00000523264/Downstream/294439;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/79325, chr8-CpG: 21/Downstream/3377429
Nearby gene
KCNV1
Upstream sequence
tggtgcccagtcccatcgaccgcccaggggctgagcagtgcaggcctgcccgtgggactgactgactggcggcccctgggtgggatccactaggcaaagc
Downstream sequence
CTGTTCTCAGGCCATAATTACTAGTATTTTCATAATTACTAGTATTAGCAACAGTAAATTCTAGAATATTCCACCTAATCAGTAATAGATATATTTAAAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate