Basic Information
VIS ID
TVIS10019846
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37.55
Start
35557783/35332717 (Hg38)
End
35557783/35332717 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/1914153; hsa-mir-10b/Downstream/138688;
Nearest TSS
ENST00000437798/Upstream/169914; ENST00000428774/Downstream/1022397;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1605100, chr2-CpG: 191/Downstream/1022537
Nearby gene
LINC01320
Upstream sequence
catactgtggaagctttgttctttcactctttgcaataaatcttgctgctgctcactctttgggtccacactgcctttatgagctgtaacactcaccgcg
Downstream sequence
ttaattttaagtaacttttcatcaggtttgactttcatgttatagaaataggctttccataaggagaagcatccacacaggaggtttttctttacttttt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate