Basic Information
VIS ID
TVIS10019849
Fusion event
HBV-LOC101928277 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1823
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37.55
Start
135129536/134808398 (Hg38)
End
135129536/134808398 (Hg38)
Location type
Intronic
Target gene
LOC101928277
Nearest miRNA
hsa-mir-10398/Upstream/2693135; hsa-mir-1202/Downstream/170940;
Nearest TSS
ENST00000381078/Upstream/101049; ENST00000416448/Downstream/120763;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/490515, chr6-CpG: 35/Downstream/246213
Nearby gene
ALDH8A1
Upstream sequence
gaaagtaaatgagttcttcaggagggtaaaggtgagggctgttaagggaagttcggaggtgtagggagacaggagatgttgcctagtctgcatgtaagac
Downstream sequence
TAAAATAGTCCATATAGTGATAGGCTTGCTGTTTGCTTATGCAAGAATGTGAAATACCTCGAGAGGCAGGAAAATCTTCTGAAGAGAAGTTTTGGAATCA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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