hsa-mir-497-3p _LIHC.png
DPP6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019850
Fusion event
HBV-DPP6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1812
Integrated sequence
AAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGC| |ACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCG
Host Sequence
Chromosome
chr7
Cytoband
q36.2
Reference genome
GRCh37.55
Start
154599024/154807314 (Hg38)
End
154599024/154807314 (Hg38)
Location type
Intron16
Fragile sites / regions
FRA7I
Target gene
DPP6
miRNAs that regulate target gene
hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-4668-5p ; hsa-mir-3153 ; hsa-mir-513b-3p ; hsa-mir-1276 ; hsa-mir-497-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-511-5p ; hsa-mir-6830-3p
Nearest miRNA
hsa-mir-10399/Upstream/3373675; hsa-mir-153-2/Downstream/2767022;
Nearest TSS
ENST00000635602/Upstream/3422; ENST00000488512/Downstream/58169;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/12688, chr7-CpG: 19/Downstream/85378
Upstream sequence
ggagtagagttgatataaggagaaaggtttttcaagtaagtgtggaggagggtggcagcttgctgatgtgaaatgtctggggaggtcttgctggacctgt
Downstream sequence
CTTTACGTTTCATACAGGTGTACAGCTTATCAGAGTGTTCTGTGCACACTGTGCCAGTAATCTCTCAGTTTGTCTCCCATTGTCCACAAAAAATAATAGT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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