Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019851
Fusion event
HBV-RBP4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1659
Integrated sequence
CCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAA| |GAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGG
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
Start
End
95358052/93598295 (Hg38)
Location type
Intron2
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-107/Upstream/4005468; hsa-mir-1287/Downstream/2466020;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/30944, chr10-CpG: 106/Downstream/2337
Upstream sequence
aatggactcaatggaatggaatggaatggaatgggatgaaatagaatggaatgCATTTGAAATGAATGGACCCGAAAAgaatggaatggaatggattgga
Downstream sequence
tccattaaagcctcatccggtgctgtcttttgggggaaaataaaatactggtgaaccattgcctcgcttttttgcctcttgctgtgctgtcataatacat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.