Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019852
Fusion event
HBV-RBP4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
488
Integrated sequence
GGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCC| |AGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGAC
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
Start
End
95360149/93600392 (Hg38)
Location type
Exon3
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-107/Upstream/4007565; hsa-mir-1287/Downstream/2463923;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/33041, chr10-CpG: 106/Downstream/240
Upstream sequence
ATGGCTACAAATTGGACTGCAACATTCTAGGTCTTGGAAAATCACAGCAAGGCCAAGAAAAGTTGGAGTAGTTTTATTAACCAGAGTGTTTATGTTTTCA
Downstream sequence
ACAGTGTGTAGCTTATGCTACACACTGTACTCCATTTGCTCTTTACAACCCTGAAAAATAAATATGAGCCATTGTTACTACAGCATCCTTGTTTGGTTTT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.