Basic Information
VIS ID
TVIS10019854
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2521
Integrated sequence
AGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAAT| |CCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAA
Host Sequence
Chromosome
chr13
Cytoband
q21.2
Reference genome
GRCh37.55
Start
61590175/61016041 (Hg38)
End
61590175/61016041 (Hg38)
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/5841493; hsa-mir-1267/Downstream/183757;
Nearest TSS
ENST00000623511/Upstream/98999; ENST00000455977/Downstream/399481;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/618130, chr13-CpG: 36/Downstream/2795545
Nearby gene
MIR3169
Upstream sequence
AACCCTATGATCACTATTATTTTGCTGTACAGtttgtcccacatagggtatcagctctgctcttttattctccaagccttgctctgaaaaaggctgctgt
Downstream sequence
gtgtagcaaacttttttgaaggctttatgtaattgaggatataataaataaggaaaaaaaactcaaagttggatactaattatgattatttcCATAAACC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate