Basic Information
VIS ID
TVIS10019856
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1812
Integrated sequence
AAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGC| |ACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCG
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37.55
Start
41067152/42915135 (Hg38)
End
41067152/42915135 (Hg38)
Nearest miRNA
hsa-mir-1180/Upstream/91192; hsa-mir-10226/Downstream/529671;
Nearest TSS
ENST00000595228/Upstream/14323; ENST00000590836/Downstream/37000;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/81230, chr17-CpG: 23/Downstream/49197
Nearby gene
G6PC
Upstream sequence
atgtctctgtgtccaaatttgcccttttataaggacatcagtcatattgaattgggcaccccctactgatctcatttttcattttaacttatttccataa
Downstream sequence
ATCAGTTTTCAGGTGGTAGGCTTGAGGATGATACACACACACACACACGCAATGCAATTCTATTATTGCCCAAAGAAAATAGACCCATTAAGGAAGTCCA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate