Basic Information
VIS ID
TVIS10019867
Fusion event
HBV-LOC105374557 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1792
Integrated sequence
CGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCAT| |AAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTG
Host Sequence
Chromosome
chr4
Cytoband
p15.1
Reference genome
GRCh37.55
Start
28478819/28477197 (Hg38)
End
28478819/28477197 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374557
Nearest miRNA
hsa-mir-12113/Upstream/3956907; hsa-mir-1243/Downstream/342385;
Nearest TSS
ENST00000502981/Upstream/41748; ENST00000514802/Downstream/519327;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1615581, chr4-CpG: 55/Downstream/1800902
Nearby gene
MIR4275
Upstream sequence
atttacagtttgattgtctaaacttaagaaaataatgaagaatacattaatgcagattcaacttaaagtcttttatatctatacacattatattgtgaac
Downstream sequence
TGTAGGAATTAACCTTTGATTCTTTACTTCCCTCAAATTCCCCATTTAACGATTTTTGAACTCACTAATATTTATCAGAAGTAAAATTGTAAATTCCAAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate