Basic Information
VIS ID
TVIS10019871
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1510
Integrated sequence
GCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTT| |CCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCA
Host Sequence
Chromosome
chr6
Cytoband
p21.31
Reference genome
GRCh37.55
Start
33936576/33968799 (Hg38)
End
33936576/33968799 (Hg38)
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/69599; hsa-mir-10398/Downstream/31173;
Nearest TSS
ENST00000381078/Upstream/57697; ENST00000478214/Downstream/87524;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/179570, chr6-CpG: 21/Downstream/59362
Nearby gene
MIR1275
Upstream sequence
actccgtctcgaggaaaaaaaaaaaaaattgaacacattctgggccgtgaaacgaaattcaactaattttaaaggattgatatcatacaggttatatttt
Downstream sequence
atagtcgacccacaagaaagcagaaaggagaaaacagggactaataacagaaggcagaaataaaaatcaaataatgaaacctctaaattcaaaaatatca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate